Studies overview

Overview of all available studies in the project

       Newly created project

The Data tab lists all studies of the project and indicates the state of samples for each study. Initially, for the newly created project, there will no studies listed:

In the upper right corner an Add a new study button allows creation of new studies. Please see here for more details on how to add a new study to the project.

       Existing projects

Once studies have been created, the page shows a list of studies:

Each row corresponds to the single study, with a graphical visualization of data upload pipeline through the different stages of sample lifecycle:

• Annotations - Shows the number and the status of created (uploaded) samples that are annotated with metadata
• Raw data - Shows the number of samples with raw data and indicates the status of raw data stage
• Processed data - Shows the number of samples with processed data and indicates the status of processed data stage
• Integrated data - Shows the number of samples with integrated data and indicates the status of the integrated data stage

The colour of the tiles indicates the status for each data upload stage described above:

• Grey - data is not yet available for this stage
• Yellow - the stage is ready for upload, import, processing or integration of samples
• Blue - the process is running for this stage
• Green - the process has successfully finished for this stage and samples are correctly annotated, raw data is imported, processed or integrated
• Red - the process for this stage has failed

Detailed view of the study

Clicking on a study row leads to the detailed view of the study, which shows the same information as the overview page, but for a single study. Here, the tiles can be unfolded with a click, displaying more information about the current status of the specific data upload stage.

Additionally, the detailed view of the study enables user to perform operations like sample import, raw data inport, data processing and integration.

To navigate back to the overview page, click on the Data Management at the top left of the content area.